this post was submitted on 07 Oct 2023
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Thanks to @[email protected], @[email protected], & @[email protected] for their responses. I forgot that Tesseract is mainly used from the command line; something which, despite being a Linux person, I'm not super proficient with. It looks like gscan2pdf and Master PDF OCRs got different results despite, I think, both using the same version of Tesseract.
So difference must be in the settings, which you can achieve both by using tesseract directly